Publications
73. 泉北斗・根岸淳二郎・三浦一輝・伊藤大雪・Pongpet Pongsivapai（2020）石狩川氾濫原水域におけるイシガイ目二枚貝の生息分布と生活史特性. 応用生態工学会誌、23、1-20.
72. Nakamura F,Watanabe Y, Negishi JN, Akasaka T, Yabuhara Y, Terui A, Yamanaka S, Konno M (2020) Restoration of the shifting mosaic of floodplain forests under a flow regime altered by a dam. Ecological Engineering、157、105974.
71. Alam MK, Negishi JN, Rahman MAT, Tolod JR (2020) Stable isotope ratios of emergent adult aquatic insects can be used as indicators of water pollution in the hyporheic food web. Ecological Indicators、118、106738.
70. Ishiyama N, Miura K, Yamanaka S, Negishi JN, Nakamura F (2020) Contribution of small isolated habitats in creating refuges from biological invasions along a geomorphological gradient of floodplain waterbodies. Journal of Applied Ecology、57、548-558.
69. Negishi JN (2019) Does the proportion of crop fields in a small catchment predict coupled benthic-hyporheic invertebrate responses? Advances in Understanding Landscape Influences on Freshwater Habitats and Biological Assemblages.
68. Ikeda K, Doi H, Terui S, Kato A, Mitsuzuka T, Kawai T, Negishi JN (2019) Estimating native and invasive crayfish distributions in relation to culvert barriers with environmental DNA. Freshwater Science、38、629-641.
67. Miura K, Ishiyama N, Kawajiri K, Atsumi K, Tachibana M, Nagasaka Y, Machida Y, Gao Y, Negishi JN, Koizumi I, Nakamura F (2019) Simple nonlethal identification criteria for two endangered freshwater pearl mussels, Margaritifera laevis and Margaritifera togakushiensis, in Hokkaido, northern Japan. Ecological Research、34、667-677.
66. 三浦一輝・石山信雄・川尻啓太・渥美圭佑・長坂有・折戸聖・町田善康・臼井平・Gao Yiyang・能瀬晴菜・根岸淳二郎・中村太士 (2019) 北海道における希少淡水二枚貝カワシンジュガイ属 2 種(Margaritifera laevis, Margaritifera togakushiensis)の河川区間での生息の重複. 保全生態学研究、24、39–48.
65. Negishi JN, Terui A, Nessa B, Miura K, Oiso T, Sumitomo K, Kyuka T, Yonemoto M, Nakamura F (2019) High resilience of aquatic community to a 100-year flood in a gravel-bed river. Landscape and Ecological Engineering、15、143–154.
64. Negishi JN, Hibino A, Miura K, Watanabe N, Kawanishi R, Toyoda K (2019) Coupled benthic-hyporheic responses of macroinvertebrates to surface water pollution in a gravel-bed river. Freshwater Science、38、591-604.
63.Ferreira-Rodríguez N,,,,,, Negishi JN,,,,, (2019) Research priorities for freshwater mussel conservation assessment. Biological Conservation、231、77–87.
62.Tiegs S,,,,,, Negishi JN,,,,,,(2019) Global patterns and drivers of ecosystem functioning in rivers and riparian zones. Science advances、5、eaav0486.
61. 岩井尚人・山中康裕・根岸淳二郎・山田朋人 (2018) タンクモデルを参考にした小学校高学年向けの地下水学習の教材開発. 水利科学、364、59–80.
60. Negishi JN, Miura K, Izumi H, Negishi Y (2018) Chestnut goby, Gymnogobius castaneus (O’Shaughnessy 1875), as a suitable host of Anemina arcaeformis (Heude 1877) in floodplain water bodies, Hokkaido, Northern Japan. Limnology、19、343–354.
59. Miura K, Izumi H, Saito Y, Asato K, Negishi JN, Ito K, Oomori A (2018) Assessment of a unionid freshwater mussel (Pronodularia japanensis) population in an agricultural channel during the 4 years following reintroduction. Landscape and Ecological Engineering、14、157-164.
58. Terui A, Negishi JN, Watanabe N, Nakamura F (2018) Stream Resource Gradients Drive Consumption Rates of Supplemental Prey in the Adjacent Riparian Zone. Ecosystems、21、772-781.
57. Wemple BC, Browning T, Ziegler AD, Celi J, Chun KPS, Jaramillo F. Leite NK, Ramchunder SJ, Negishi JN, Palomeque X, Sawyer D (2018) Ecohydrological disturbances associated with roads: Current Knowledge, research needs and management concerns with reference to the tropics. Ecohydrology、11、e1881.
56. Negishi JN, Sakai M, Okada K, Iwamoto A, Gomi T,Miura K, Nunokawa M, Ohhira M (2018) 137Cs contamination of river food-webs in a gradient of initial fallout deposition in Fukushima, Japan. Landscape and Ecological Engineering、14、55-66.
55. Haque ME, Gomi T, Sakai M, Negishi JN (2018) Seasonal variation in food web-based transfer factors of radiocesium in white-spotted char (Salvelinus leucomaenis) from headwater streams. Landscape and Ecological Engineering、14、45-53.
54. Haque ME, Gomi T, Sakai M, Negishi JN (2017) Developing a food web-based transfer factor of radiocesium for fish, whitespotted char (Salvelinus leucomaenis) in headwater streams. Journal of Environmental Radioactivity、172、191-200.
53. Terui A, Akasaka T, Negishi JN, Uemura F, Nakamura F (2017) Species-specific use of allochthonous resources by ground beetles (Carabidae) at a river–land interface. Ecological Research、32、27-35.
52. Miura K, Watanabe N, Negishi JN (2017) Leaf litter patches in stream create overwintering habitats for Ezo brown frog (Rana pirica). Limnology、18、9-16.
51. Ikeda K, Doi H, Tanaka K, Kawai T, Negishi JN (2016) Using environmental DNA to detect an endangered crayfish Cambaroides japonicus in streams. Conservation Genetics Resources、8、231-234.
50. Sakai M, Gomi T, Negishi JN, Iwamoto A, Okada, K (2015) Different cesium-137 transfers to forest and stream ecosystems. Environmental Pollution、209、46-52.
49. Sakai M, Gomi T, Naito RS, Negishi JN, Sasaki M, Toda H, Nunokawa M, Murase K (2015) Radiocesium leaching from contaminated litter in forest streams. Journal of Environmental Radioactivity、144、15-20.
48.永山滋也・原田守啓・萱場祐一・根岸淳二郎（2014）イシガイ類を指標生物としたセグメント2における氾濫原環境の評価手法の開発：木曽川を事例として. 応用生態工学会誌、17、29-40.
47. Negishi JN, Tamaoki H, Watanabe N, Nagayama S, Kume M, Kayaba Y, Kawase M (2014) Imperiled freshwater mussels in drainage channels associated with rare agricultural landscape and diverse fish communities. Limnology、15、237-247.
46. Nakamura F, Ishiyama N, Sueyoshi M, Negishi JN, Akasaka T (2014) The significance of meander restoration for the hydrogeomorphology and recovery of wetland organisms in the Kushiro River, a lowland river in Japan. Restoration Ecology、22、544-554.
45. Negishi JN, Soga M, Ishiyama N, Suzuki N, Yuta T, Sueyoshi M, Yamazaki C, Koizumi I, Mizugaki S, Hayashida K, Nunokawa M, Yoshimura C (2014) Geomorphic legacy controls macrophyte distribution within and across disconnected floodplain lakes. Freshwater Biology、59、942-954.
44. Negishi JN, Katsuki K, S Nagayama, M Kume, Kayaba Y (2014) Terrestrialization alters organic matter dynamics and habitat quality for freshwater mussels (Unionoida) in floodplain backwaters. Freshwater Biology、59、1026-1038.
43. Kume M, Negishi JN, Sagawa S, Miyashita T, Aoki S, Ohmori T, Sanada S, Kayaba Y (2014) Winter fish community structures across floodplain backwaters in a drought year. Limnology、15、109-115.
42. Boulton A, Dahm C, Correa L, Kingsford R, Jenkins K, Negishi JN, Nakamura F, Wijsman P, Sheldon F, Goodwin P (2013) Good News: Progress in Successful River Conservation and Restoration. Chapter 13 In S. Sabater & A Elosegi, eds. River Conservation: Challenges and Opportunities, BBVA fonudation.
41. Soga M, Ishiyama N, Sueyoshi M, Yamaura Y, Hayashida K, Koizumi, Negishi JN (2013) Interaction between patch area and shape: lakes with different formation processes have contrasting area and shape effects on macrophyte diversity. Landscape and Ecological Engineering, DOI: 10.1007/s11355-013-0216-9.
40. Doi H, Katano I, Negishi JN, Sanada S, Kayaba Y (2013) Effects of biodiversity, habitat structure, and water quality on recreational use of rivers. Ecosphere, 4, art102.
39. 久米学、小野田幸生、根岸淳二郎、佐川志朗、永山滋也、萱場祐一（2012）木曽川氾濫原水域における特定外来生物ヌートリア（Myocastor coypus)によるイシガイ科二枚貝類の食害. 陸水生物学報, 27, 41-47.
38. Beechie T, Richardson JS, Gurnell AM, Negishi JN (2012). Watershed processes, human impacts, and process-based restoration. Chapter 2 In P. Roni and T. Beechie, eds. Stream and Watershed Restoration: A Guide to Restoring Riverine Processes and Habitats, Wiley.
37.永山滋也、根岸淳二郎、久米学、佐川志朗、塚原幸治、三輪芳明、萱場祐一（2012）農業用の水路における季節と生活史段階に応じた魚類の生息場利用. 応用生態工学会誌、15、147-160.
36. 根岸淳二郎 (2012) 応用生態工学的研究におけるプロセスベースアプローチ. 応用生態工学会誌、15、235-242.
35. 山下慎吾、根岸淳二郎、河口洋一、赤坂卓美、中村知美、島谷幸弘、中村太士 (2012) フロリダ州エバーグレイズ流域における流域再生プロジェクトと研究学習拠点. 流域圏学会誌、1、15-20.
34. Negishi JN, Nagayama S, Kume M, Sagawa S, Kayaba Y, Yamanaka Y (2013) Unionoid mussels as an indicator of fish communities: a conceptual framework and empirical evidence. Ecological Indicators, 24, 127-137.
33. Negishi JN, Sagawa S, Kayaba Y, Sanada S, Kume M & Miyashita T (2012) Mussel responses to flood pulse frequency: testing the role of local habitat conditions. Freshwater Biology, 57, 1500-1511.
32. Kobayashi S, Gomi T, Sidle RC, Negishi JN (2012) Distribution of amphipods (Gammarus nipponensis Ueno) among mountain headwater streams with different legacies of debris flow occurrence. Ecohydrology, DOI: 1002/eco.1249.
31. Sagawa S, Kayaba Y, Tashiro T, Sanada S, Negishi JN (2011) Effects of catastrophic floods on daytime interstitial habitat of bagrid catfish Pseudobagrus ichikawai. Limnology in Tokai Region of Japan, 44, 19-28.
29. Sagawa S, Kayaba Y, Tashiro T, Sanada S & Negishi JN (2010) Effects of the shoreline rehabilitation works on the short-cut straightening channel in Satetsu River, Japan. Proceedings of river engineering, JSCE
28. Negishi JN, Doi H, Katano I & Kayaba Y (2011) Seasonally tracking vertical and horizontal distribution of unionid mussels (Pronodularia japanensis): Implications for agricultural drainage management. Aquatic Conservation: Marine and Freshwater Ecosystems, DOI: 10.1002/aqc.1153
27. Negishi JN, Sagawa S, Kayaba Y, Sanada S, Kume M, Miyashita T, Ohmori T (2010) Using airborne scanning laser altimetry (LiDAR) to estimate surface connectivity of floodplain water bodies. River Research and Applications, DOI: 10.1002/rra.1442
26. Gomi T, Kobayashi S, Negishi JN & Imaizumi F (2010) Short-term responses of macroinvertebrate drift following experimental sediment flushing in a Japanese headwater channel. Landscape and Ecological Engineering, DOI: 10.1007/s11355-010-0107-2
25. Negishi JN, Kayaba Y (2010) Size-specific growth patterns and estimated longevity of unionid mussel (Pronodularia japanensis), Ecological Research, 25, 403-411
24. Negishi JN, Kayaba Y (2009) Effects of handling and density on the growth of the unionid mussel (Pronodularia japanensis). Journal of the North American Benthological Society, 28, 821-831
23. Katano I, Negishi JN, Minagawa T, Doi H, Kawaguchi Y, Kayaba Y (2009) Longitudinal macroinvertebrate organization over contrasting discontinuities: effects of a dam and tributary. Journal of the North American Benthological Society, 28, 331-351
22. Imaizumi F, Gomi T, Kobayashi S, Negishi JN (2009) Changes in bedload rate on a gravel bed river caused by episodic sediment supply. Catena, 77, 207-215
21. Ziegler AD, Giambelluca TW, Nullet MA, Sutherland RA, Tantasarin C, Vogler JB, Negishi JN (2009) Throughfall in an evergreen-dominated forest stand in northern Thailand: comparison of mobile and stationary methods. Agricultural and Forest Meteorology, 149, 373-384
20. Negishi JN, Kayaba Y (2008) Floodplain deterioration and endangered freshwater mussels (in Japanese). Civil Engineering Journal, 50, 44-45
19. Negishi JN, Kayaba Y, Sagawa S (2008) Ecological consequences of changing riverscape: terrestrialization of floodplain and freshwater mussels (in Japanese). Civil Engineering Journal, 50, 38-41
18. Kitamura J, Negishi JN, Nishio M, Sagawa S, Akino J & Aoki S(2008) Host mussel utilization of the bitterling Acheilognathus longipinnis(Cyprinidae, Acheilognathinae) in a lowland reach of the Moo River in Himi, Japan. Ichthyological Research, DOI 10.1007/s10228-008-0082-x,
17. Negishi JN, Kayaba Y, Tsukahara K & Miwa Y (2008) Towards conservation and restoration of habitats for freshwater mussels (Unionoida) (in Japanese with English abstract). Ecology and Civil Engineering, 11, 195-211
16. Nunokawa M, Gomi T, Negishi JN, Nakahara O (2008) A new method to measure substrate coherent strength of Stenopsyche marmorata. Landscape and Ecological Engineering, DOI 10.1007/s11355-008-0044-5
15. Negishi JN, Kayaba Y, Tsukahara K, Miwa Y (2008). Ecological studies on Unionoida: current status and future challenges (in Japanese). Japanese Journal of Ecology, 58, 37-50
14. Negishi JN, Sidle RC, Ziegler AD, Noguchi S, Abdul Rahim N (2008) Intercepted subsurface flow accelerate road erosion in a tropical catchment. Earth Surface Processes and Landforms, 33, 1174-1191
13. Ziegler AD, Negishi JN, Sidle RC, Gomi T, Noguchi S, Abdul Rahim N (2007) Persistence of road runoff generation in a logged catchment in Peninsular Malaysia . Earth Surface Processes and Landforms, 32, 1947-1970
12. Negishi JN, Noguchi S, Sidle RC, Ziegler AD, Abdul Rahim N (2007) Stormflow generation including soil pipes in a tropical zero-order basin of Peninsular Malaysia. Hydrological Processes, 21, 789-806
11. Ziegler AD, Negishi JN, Sidle RC, Noguchi S, Abdul Rahim N (2007) Impacts of logging disturbance on hillslope saturated hydraulic conductivity in a tropical forest in Peninsular Malaysia. Catena, 67, 89-104
10. Takao A, Negishi JN, Nunokawa M, Gomi T, Nakahara O (2006) Potential influences of net-spinning caddisfly (Trichoptera: Stenopsyche marmorata) on substratum stability in heterogeneous field environments. Journal of the North American Benthological Society,25, 545-555
9. Negishi JN, Richardson JS (2006) An experimental test of the effects of food resources and hydraulic refuge on patch colonization by stream macroinvertebrate during spates. Journal of Animal Ecology, 75, 118-129
8. Negishi JN, Sidle RC, Noguchi S, Abdul Rahim N, Stanforth R (2006) Ecological roles of road side fern (Dicranoptera currani) on logging road recovery in Peninsular Malaysia: preliminary results. Forest Ecology and Management, 224, 176-186
7. Gomi T, Sidle RC, Noguchi S, Negishi JN, Abdul Rahim N & Sasaki S (2006) Sediment and wood accumulations in tropical headwater streams: effect of logging and riparian buffers. Forest Ecology and Management, 224, 166-175
6. Sidle RC, Ziegler AD, Negishi JN, Abdul Rahim N, Siew R, Tukelboom F (2006) Erosion processes in steep terrain – truths, myths, and uncertainties related to forest land use in Southeast Asia. Forest Ecology and Management, 224, 199-225
5. Ziegler AD, Negishi JN, Sidle RC, Preechapanya P, Sutherland RA, Giambelluca TW, Jaiaree S (2006) Reduction of stream sediment concentration by a riparian buffer: filtering of road runoff. Journal of Environmental Quality, 35, 151-162
4. Zhang Y, Richardson JS, Negishi JN (2004) Detritus processing, ecosystem engineering and benthic diversity: a test of predator-omnivore interference. Journal of Animal Ecology, 73, 756-766
3. Zhang Y, Negishi JN, Richardson JS, Kolodziejczyk R (2003) Impacts of marine-derived nutrients on stream ecosystem functioning. Proceedings of the Royal Society London Biology B, 270, 2117-2123
2. Negishi JN, Richardson JS (2003) Responses of organic matter and macroinvertebrates to boulder cluster placements in a small stream of Southwestern British Columbia, Canada. Canadian Journal of Fisheries and Aquatic Sciences, 60, 247-258
1. Negishi JN, Inoue M, Nunokawa M (2002) Effects of channelization on stream habitat in relation to a spate and flow refugia for macroinvertebrates in northern Japan. Freshwater Biology, 47, 1515-1529